Results for "Tree View."
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman...2889 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building dependency tree...1160 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...for bioqueen: Reading package lists... Done Building dependency tree Reading state informa...tars, test, uninstall, unlink, unpublish, unstar, update, upgrade, view. Run `apm help ` to see the...1159 days ago
Bash script to convert SAM to BAM visualization ready
samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai2167 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --left /media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_norib...
2111 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont echo -e "This is a bash scrip to map your long reads and make it...2106 days ago
- ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/n...master) pip install PyIntervalTree Collecting PyIntervalTree Downloading https://files..../CMakeFiles/zlibstatic.dir/inftrees.o [ 12%] Building C object...t src/CMakeFiles/sniffles.dir/tree/Breakpoint_Tree.cpp.o [ 58%]...
2082 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andy...... Done Building dependency tree Reading state informa...ypus/src/cython/arrays.pxd tree = Parsing.p_module(s, pxd, fu...s/src/cython/fastafile.pxd tree = Parsing.p_module(s, pxd, fu...pus/src/cython/cwindow.pxd tree...2003 days ago
- $ sudo apt-get install rakudo [sudo] password for jit: Reading package lists... Done Building dependency tree...
1534 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@SQ/{gsub("^SN:","",$2);print $2}' ); do samtools view...1987 days ago
