Results for "Tutorial"
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Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory (cd) to the linuxTutorial folder, and do all the processing inside: [uzi@qui...Tags: Bioinformatics, Tutorial, Genome, NGS, Pipelines
2859 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisions 1.0: May 30, 2013: First public release on biobits.org. 1.1: July 24, 2013: Updated wi...
Tags: Bioinformatics, NGS, Sequence, Samtools, Primer, Tutorial
2858 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive e...
Tags: Bioinformatics, Analysis, NGS, Tutorial, Assembler, Genome
2784 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly ...
Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial
2689 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discov...Tags: Bioinformatics, Patterns, Tools, Book, Tutorial, Paper, Script, Algo
2676 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers all steps from tissue collection, sample prepara...
Tags: Bioinformatics, NGS, Guide, Project, Tutorial
2575 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Predi...Tags: Bioinformatics, Metagenome, Workshop, Tutorial
2559 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases the full genome sequence but sometimes, a libra...
Tags: Bioinformatics, Alignment, NGS, Mapping, Tutorial
2545 days ago
- This is not so much an instructional manual, but rather notes, tables, and examples for Python syntax. It was created by the author as an additional resource during training, meant to be distributed as a physical notebook. Participants (who favor the physical characteristics of dead tree material...
Tags: Python, Notebook, Tutorial, Learn
2513 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February ...Tags: Bioinformatics, Tutorial, SciLifeLab, Genome, Metagenome, Cources
2195 days ago
