Results for "UG"
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Comment on "Short-read assembly using Spades !"
...using various tools such as Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This can be done through a command-line interface or...405 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...sources of genomic data, such as gene expression or functional analysis. Overall, genome synteny analysis is a complex process that requires a thorough understanding of genome stru...413 days ago
Comment on "Elgg Installation steps !"
Useful for debugging https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd596 days ago
Comment on "Far Manager Commands and Links !"
...d to create a connection to our server. Let's say you have data for connecting via SSH:Login: root, password: pass, server IP: 127.0.0.1, port 22As suggested to create a new session...930 days ago
Comment on "Far Manager Commands and Links !"
...folder AltF8 Show history of executed commands F9 Pull down menu F10 Quit F11 Open list of plugins, available for current con...951 days ago
Comment on "URMAP, an ultra-fast read mapper"
...ithm which is ~3x faster but somewhat less accurate. To get the full speed improvement, the index should also be built with the -veryfast option, though UFI indexes are compatible w...1273 days ago
Comment on "Sibelia: A comparative genomics tool"
...ry files in another folder due to some reasons, use this parameter. Although the files exist only for a...0-mers that are separated from each other by at most 15000 symbols. Although this description is very sim...1275 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy...oid parsing problems. View or parse MAF output The output of Mugsy is Multiple Alignment Forma...1275 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...irst thing we reapr needs, is a list of all “perfect” reads. This is reads that have a perfect map to the reference. Reapr is finicky though, and can’t use librari...1327 days ago
Comment on "SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator"
Another nice simulation tool https://bioinformaticsonline.com/bookmarks/view/40302/simug-a-general-purpose-genome-simulator1391 days ago
