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Results for "Usage"

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• • Jitendra Narayan@admin

  

  Check the Size of a directory & Free disk space.

  The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...

  Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux

  3687 days ago

• • Jit@jit.aber

  

  The command du "summarizes disk usage of each FILE, recursively for directories," e.g., du -h | sort -h #Disk #Usage #Linux

  Tags: Disk, Usage, Linux

  1840 days ago

• • Jit@jit.aber

  

  Generate interactive codon usage plots

  Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo

  Tags: Generate, interactive, codon, usage, plots

  2243 days ago

• • Surabhi Chaudhary@surabhi

  

  %MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding.

  %MM calculates whether a given gene sequence encodes amino acids using the most common codons possible, the least common codons possible, or (most typically) some combination of these extremes. See our PLoS ONE paper for more details on how the %MinMax algorithm works. %MinMax results are ave...

  Tags: %MinMax, tool, calculating, synonymous, codon, usage, impact, protein, folding

  2158 days ago

• • Neelam Jha@neelam

  

  analyzing codon usage

  perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.

  Tags: analyzing, codon, usage

  1626 days ago