3649 days ago
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2850 days ago
Many-Core Engine (MCE) for Perl example
...ny-Core Engine. The various MCE options are described here. MCE::Signal Temporary directory creation, cleanup, and signal handling. MCE::Util Utility functions for Many-Core Engin...2634 days ago
2618 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...ogous genes found within a single genome, segmental genome duplications can be revealed. This software distribution includes both the DAGchainer utility and a Java-based graphical in...2617 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, whene...2516 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...rcial bioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of traditional BLAST implemen...2459 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...ggle) scales to billions of intervals and is over three orders of magnitude faster than existing methods. Its speed extends the accessibility and utility of resources such as ENCODE,...2290 days ago
ARCS: scaffolding genome drafts with linked reads
...ABySS H.sapiensgenome assembly can be increased over six-fold, using moderate coverage (25-fold) Chromium data. We expect ARCS to have broad utility in harnessing the barcoding i...2235 days ago