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  • SCALCE

    ...sp;ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with consistent read le...

    2905 days ago

  • orthodotter: Synteny plots (oxford grid)

    ...ist is the minimal distance (euclidian) between two points and min_nb_genes the minimal number of genes in a cluster to be valid. -o <file>...

    2424 days ago

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  • Downloading GATK !

    ...rols how spark tools are run valid targets are: LOCAL:...(Picard) Asserts the validity for specified Illumina bas...ityScoreDistribution on Spark ValidateSamFile (Picard)...cordance of an input VCF against a validated truth VCF CountFalse...

    2038 days ago

  • To convert just one specific read group to fastq

    ...the project run information. esearch -db sra -query $PROJECT | efetch -format runinfo > runinfo.txt # Select the first N elements. Keep only valid SRR numbers. cat runinfo.txt...

    1505 days ago

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