Tags: Bioinformatics, Validation, Assembly, BUSCO, Orthologs, NGS
2902 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been publishe...Tags: Bioinformatics, Analysis, NGS, Validation, Assembly, Genome
2782 days ago
What are the best method to validate genome assembly ?
I am working on a metazoan genome. I wanted to try the best known method to validate the assembly structure. Your suggestions are welcome.Tags: Genome, Assembly, Validation, Check
2182 days ago
Tags: CheckM, Assessing, quality, microbial, genomes, recovered, isolates, single, cells, metagenomes, Validation
2159 days ago
Tags: VCFtools, Perl, API, Vcf.pm, Perl, scripts, VCF, validation, file, merging, intersecting, complements
2083 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the read alignment and variant caller’s interna...Tags: Merfin, improved, variant, filtering, assembly, evaluation, polishing, k-mer, validation
747 days ago