Results for "Variation"
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...ls for discovering and genotyping structural variations using sequencing data. The methods are designed to detect shared variation using data from multiple indi...d support heterogeneous data sets, including variations in sequencing depth, read le...2789 days ago
- ...ison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the...
2793 days ago
BLAST Ring Image Generator (BRIG)
...s and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes,...2764 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...nt forms of selection can be modelled, based on universally pleiotropic loci with several bi- or multi-allelic models. Spatial and temporal variation of selection on quantita...2763 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...ntrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNI...2745 days ago
- ...nchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a...
2730 days ago
- ...e Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized...
2706 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often base...for a quick and comprehensive interpretation of all important genomic variations together with various supple...2654 days ago
- ...s and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes,...
2625 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read T...2614 days ago
