Results for "Variations"

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  • Structural variants PPT

    1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference:  https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf

    Tags: Bioinformatics, Analysis, NGS, Structure, Variations, Genome

    2782 days ago

  • ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information

    This is a tool for detecting structural variations using soft-clipping information From SAM files. https://github.com/shinout/clipcrop

    Tags: ClipCrop, tool, detecting, structural, variations, single-base, resolution, soft-clipping, information

    2024 days ago

  • ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information

    ClipCrop for detecting SVs with single-base resolution using soft-clipping information. A soft-clipped sequence is an unmatched fragment in a partially mapped read. To assess the performance of ClipCrop with other SV-detecting tools, we generated various patterns of simulation data – SV len...

    Tags: ClipCrop, tool, detect, structural, variations, single-base, resolution, soft-clipping, information

    1917 days ago

  • MAJIQ 2 is released !

      Ability to detect, quantify, and visualize complex and de-novo splicing variations from RNASeq. MAJIQ’s accuracy compares favorably to other algorithms. MAJIQ 2 is *way* faster, more memory and I/O efficient New visualization (VOILA 2.0) Ability to analyze hundreds and thousands ...

    Tags: Majiq, Voila, detect, quantify, visualize, complex, de-novo, splicing, variations, RNASeq

    1381 days ago