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Results for "Velvet"

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• • Rahul Agarwal@raag

  

  Comparison of Short Read De Novo Alignment Algorithms

  Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms  Author: Nikhil Gopal

  Tags: Sequencing, assembly, de novo assembly, velvet

  3893 days ago

• • Poonam Mahapatra@poonam

  

  Standardized velvet assembly report

  Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, ad...

  Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, standardized-velvet-assembly-report

  2688 days ago

• • Poonam Mahapatra@poonam

  

  Velvet tutorial

  The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly ...

  Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial

  2688 days ago