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Bio-Scripts

• • Jit@jit.aber

  

  Create a conda environment !

  JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1201 days ago

• • Jit@jit.aber

  

  Install grabseqs with conda !

  (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1201 days ago

• • Aaryan Lokwani@aaryan

  

  Install Perl Locally !

  ...::IxHash Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simple Test::XPath IO::String Bio::Perl version # Set $PERL5LIB to find th...

  2129 days ago

• • Neelam Jha@neelam

  

  Install NCBI entrez-direct and esearch using conda !

  ...install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 13.9-pl5262...

  1086 days ago

• • LEGE@lege

  

  Install CANU with conda !

  ...l -c bioconda/label/cf201901 canu Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. bioconda/la...

  1039 days ago

• • LEGE@lege

  

  Install Shasta using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1039 days ago

• • LEGE@lege

  

  Install CVSTK using codna !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1039 days ago

• • LEGE@lege

  

  Install seqkit using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1039 days ago

• • LEGE@lege

  

  Install Minimap2 using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1039 days ago

• • LEGE@lege

  

  Install seqtk using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1039 days ago

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