Results for "View"
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Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing addi...Tags: Bioinformatics, Laj, View, Alignment, Lastz
2612 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count,&...
Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM
2617 days ago
- Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive charts are self-contained and can be viewed with a...
Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph
2591 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning. The current tree contains ALL species present in NCBI ...
Tags: Bioinformatics, Lifemap, Tree, Phylogeny, Taxonomy, Draw, View, Zoom, See, France, Interactive
2572 days ago
- CrusView is a java based tool for karyotype/genome visualization and comparison of crucifer Species. It also integrates an binary version of KGBassembler and a post-modification step for its assembling result.
Tags: CrusView, Plant, View, Visualization, See, Alignment
2205 days ago
- GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. G...
Tags: GView, Java, application, view, prokaryote, genomes, circular, linear, context
2477 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. Scales easily to multi-gigabase genomes a...Tags: JBrowse, Embeddable, genome, browser, genome, reads, view, map, JavaScript, HTML5
2127 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.Tags: Scribl, HTML5, canvas, genomics, graphic, library, view, genome
2009 days ago
gggenomes: A grammar of graphics for comparative genomics
gggenomes is a versatile graphics package for comparative genomics. It extends the popular R visualization packageggplot2 by adding dedicated plot functions for genes, syntenic regions, etc. and verbs to manipulate the plot to, for example, quickly zoom in into gene neighborhoods.Tags: gggenomes, grammar, graphics, comparative, genomics, view
1178 days ago
Comparative genomics visualisation tools !
Comparative genomics visualisation tools !Tags: Comparative, genomics, genome, visualisation, view, see, plot, tools, tool
798 days ago
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