3905 days ago
Structure of Binary files used for storing sequencing data-bam and sff
...on torrent and 454 files): http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff Binary file Editor and Viewer: http://mh-nexus.de/en/hxd/3883 days ago
List of bioinformatics open source projects/software.
...ioviz.org/igb/ Java-based desktop genome browser Integrative Genomics Viewer (IGV) http://www.broadinstit...sets Java Treeview http://jtreeview.sourceforge.net/ microarray data viewer LabKey Server http://labkey...3720 days ago
Commercial and public next-gen-seq (NGS) software
...aq is also able to find SNPs with its own alignment. It has a graphical viewer, but again for its own alignm.../INDEL discovery" category. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Database EagleView -...3482 days ago
Apps for Busy Bioinformatics Researchers !!!
...iPad GeneIndex quickly provides information about genes from various sources. It also includes a RSS reader for journal feeds as well as a PubMed viewer. Key Features: Look up ge...3504 days ago
Software packages for next gen sequence analysis
...elopers at Boston College. Genome Annotation/Genome Browser/Alignment Viewer/Assembly Database * EagleView - An information-rich genome assembler viewer. EagleView can display a doze...3206 days ago
Comprehensive list of visualization tools for biological pathways
...and customization of pathway maps http://pathways.embl.de/ Kegg-Based Viewer KEGG-based pathway vis...ical context of metabolic pathways http://metpa.metabolomics.ca Omics Viewer Data mapping on BioCyc...2250 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...oughput sequencing data Input: gzip-compressed FASTA or FASTQ Output: VCF files; one for TRs and observed alleles, another file contains link to viewer Somatic Callers Cak...2872 days ago
Genome Assembly Tools and Software - PART1 !!
...ly Visualization Tablet is a lightweight, high-performance graphical viewer for next generation sequence...vance transcriptomic study. EagleView 2.2 – Genome Assembler Viewer EagleView is an informatio...2649 days ago
Awesome perl frameworks, libraries and software - PART 1
...n is a high-performance preforking Perl PSGI web server ronilaukkarinen/weed - Heavily Xchat inspired beautiful irssi theme. trizen/youtube-viewer - A lightweight applicat...2452 days ago