Computational Proteomics : Lets remember the basics
...spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visualization software and dreaming big. Fo...3476 days ago
List of bioinformatics workflow management tools !
...lar open-source, web-based platform for data intensive biomedical research. Has several features, from data analysis to workflow management to visualization tools. [ paper-2018 ...1131 days ago
A Brief Bioinformatics Tutorial
..., how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visualization, homology modeling and struct...3626 days ago
Software developed in pevsner lab
...SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze...3488 days ago
3817 days ago
Awesome perl frameworks, libraries and software - PART 3
...spencertipping/js-in-ten-minutes - JavaScript in Ten (arbitrarily long) Minutes kazeburo/GrowthForecast - Lightning Fast Graphing/Visualization qooob/authentic-theme -...2483 days ago
Awesome perl frameworks, libraries and software - PART 4
...rting into a "Junior" sized planner. ccurtsinger/stabilizer - Stabilizer: Rigorous Performance Evaluation zrlram/afterglow - graph visualization tool utcompling/OpenNLP-Mode...2483 days ago
3931 days ago
Useful Links for Bioinformaticians
...Exploring Distant Protein Sequence Relationships Sequence Analysis tutorial The Sequence and Structure Searching Site Flexible Information Visualization of Multivariate Data from Bio...3119 days ago
3908 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...tion, reads counting, data preprocessing, gene set test, to pathway visualization in about 40 lines of codes. T...nks, and feed the results into GAGE/Pahview for pathway analysis or visualization. All these workflows are impl...3822 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...plus tuition fees at the EU students rate) is available for four years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. R...3905 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...roup) Statistical machine learning (Statistical Machine Learning group) Analysing ubiquitous sensor data (HIIT-Wide Focus Area) Interactive visualization (HIIT-Wide Focus Area) Affec...3883 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...ired by mutations to cause disease. This work is supported through the development of open-source biological pathway and network databases and visualization and analysis software. Predi...3937 days ago
BC Cancer Agency Genome Sciences Centre
Research Area Genome analysis, genome visualization, mutation detection, molecular docking, comparative genomics, cancer informatics Link @ http://www.bcgsc.ca3937 days ago
Des Higgins: Visualizing Multiple Sequence Alignments
...://www.bioinf.ucd.ie) gives a very entertaining introduction to the visualization of multiple sequence alignmen...://www.vizbi.org) funded by NIH & EMBO. For information about data visualization efforts at the Broad Institut...3710 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #P...1090 days ago
Bash script to convert SAM to BAM visualization ready
samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai2172 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due t...Tags: Bioinformatics, Computational Biology, NGS, Orione, Microbiology, Visualization
3563 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/...Tags: Bioinformatics, Computational Biology, NGS, IGV, Visualization, Tutorial
3574 days ago
Comment on "Sibelia: A comparative genomics tool"
...an interactive diagram (see section "d3" visualization"). The blocks are also can be...ized with "Circos" (see section "Circos" visualization"). While "Circos" is better f...the file "blocks_sequences.sam". "d3" visualization ------------------ File nam...1274 days ago
2126 days ago