Results for "Visualize"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...thologous.html) SyntenyMiner is being developed as an application to visualize and interrogate comparisons a...contain synteny regions between two or more genomes and interactively visualize the synteny between them. GSV...2599 days ago
Bioinformatics PhDs - Cover Letter
...about doing some research so you can speak in more specific terms about how you would fit into and enhance the department's offerings. Help them visualize how you would strengthen them...3354 days ago
- +4 more Blogs
Bookmarks
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of...elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between...2939 days ago
- ...visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and K...
2868 days ago
- +46 more Bookmarks
Files
Applied Statistics for Bioinformatics using R
...book is to give an introduction into statistics in order to solve some problems of bioinformatics. Statistics provides procedures to explore and visualize data as well as to test biolo...2064 days ago
Top-level pages
- ...aches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze, or visualize such data." - NIH Bioinformat...
3936 days ago
Next generation sequencing in R or bioconductor environment
...ture data to various genome browsers and file formats (such as GFF). See the Small RNA Profiling exercise for an example of using rtracklayer to visualize alignment coverage. Documenta...3613 days ago
- +3 more Top-level pages
Wire posts
Opportunity posts
- ...this biological information does not equal biological knowledge. As biology becomes large-scale, new methods have to be developed to integrate, visualize and query the large amounts o...
3937 days ago
3 days intensive course on Understanding 'omics data in Basel, Switzerland, 19-21st November
...-on sessions will be performed using the Genedata Expressionist® software, which enables participants to quickly apply the discussed methods and visualize results. No previous knowledg...3865 days ago
- +1 more Opportunity posts
ResearchLabs posts
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...elop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their data. Such integration...1342 days ago
Bio-Scripts
Download genome using NCBI esearch command line !
...efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using...1090 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse com...1090 days ago
- +2 more Bio-Scripts
Tags
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of chromosomes. Confirming and improving the quality...
Tags: Bioinformatics, Analysis, NGS, Stats, Assemble, Plot, TGNet, Visualize, Genome
2800 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package power...
Tags: Bioinformatics, Analysis, NGS, R-chie, Genome, RNA, Plot, Visualize
2791 days ago
- +15 more Tags
Comments
Comment on "Sibelia: A comparative genomics tool"
...icobacter_pylori.fasta Synteny blocks are visualized with an interactive diagram...visualization"). The blocks are also can be visualized with "Circos" (see section...sualization ---------------------- You can visualize synteny blocks with a colorfu...1273 days ago
- The Database for Annotation, Visualization and Integrated Discovery (DAVID ) are able to visualize genes on BioCarta & KEGG pathway maps. Other options for pathway-mining such as g...
3490 days ago
