Results for "Visualize"

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  • TGNet

    Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of chromosomes. Confirming and improving the quality...

    Tags: Bioinformatics, Analysis, NGS, Stats, Assemble, Plot, TGNet, Visualize, Genome

    393 days ago

  • R-chie

    R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package power...

    Tags: Bioinformatics, Analysis, NGS, R-chie, Genome, RNA, Plot, Visualize

    385 days ago

  • Shinyheatmap

    Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available computational resources as well a...

    Tags: Bioinformatics, Analysis, NGS, HeatMap, Genome, Shinyheatmap, R, Visualize, Map, Transcriptomics, Metabolomics, Metagenomics

    335 days ago

  • GenomeComp

    GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsi...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp

    216 days ago

  • sockeye

    This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D model...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D

    216 days ago

  • J-Circos

    Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos

    216 days ago

  • Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level

    A tool to analyze synteny at the protein level. We develop an algorithm to detect statistically significant clusters of exons between two proteomes. The tool provides algorithms to quickly detect and visualize results in order to support conclusions from genomic data. The method discovers cluste...

    Tags: Proteny, discover, visualize, statistical, significant, syntenic, clusters, proteome

    21 days ago

  • Chord diagram

    In this blog post I’ll explain how you can hack a Chord diagram to shape it into a more Sankey like flow diagram. Why not just take a regular Sankey to visualize the flow? Well, the visualization was meant for use in the media to engage the viewers, so I wanted to create something visua...

    Tags: Chord, diagram, bioinformatics, plot, circus, circo, visualize

    8 days ago