Results for "Whole genome"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge...type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At...3692 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research...igned to provide a visual means for simultaneously comparing genomes of multiple amniote species....
3925 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3930 days ago
- Bioinformatics is developing very rapidly. With new tools...ng fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein s...ression, constructing evolutionary trees, analyzing genome rearrangements, and identifyi...
3930 days ago
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Files
- Some fish kidnaped a bioinformatician for their genome analysis.
3838 days ago
- Alien spy are looking for human genome sequences ..
3824 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a l...3937 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3929 days ago
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Pages
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequ...for the Ruby language. This project is supported by University of Tokyo (Human Genome Center), Kyoto University(Bio...3932 days ago
- I found several useful bioinformatics...riculum. By Russ Altman. Human Genome Research A description of the Human Genome Project. Retooling for Bioin...earch. Understanding the human genome By D. L. Brutlag, in&nbs...l 2001 Bioinformatics U., Genome Technology, September, 2001&n...
3906 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA seq...on sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...ally suitable language to handle ever growing genome or protein sequences. The ne...
3932 days ago
- ...s on three types of datasets: genome sequences, macromolecular str...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster...notation in the comparison of whole genomes. Several methods detec...ein folds can be analysed for whole genomes. Protein–protein inter...
3932 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics&nb...gy.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-sequenced/
3797 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science meeting aims to bring...3904 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
...the participant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome d...3914 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (...In the ten years since the first human reference genome was completed for US$3 billio...o great reduction in sequencing cost. Today a human genome can be sequenced for under US...3907 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium...uence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing...
3933 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolutionised biology....
3933 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood mo.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...ormatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Seq...3903 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy wi...3830 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...as decoded the natto bacillus genome, through analysis using Keio'...3902 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...ngton DC Local Description: There is an urgent need to translate genome-era discoveries into clinica...f disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesd...3895 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1121 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -quer...1086 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation seq...3401 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineer...ng for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and...2347 days ago
Groups
INTIMATE secrets hidden in your DNA could be st...ing a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that...t or bioinformatician you hack the entire genome to understand the god's writt...3937 days ago
Our research interest falls in the broad field of bioinfo...ing for motif finding Biclustering algorithms Genome Assembly Developement of n...embly procedure Comparative genomics approaches in genome assembly. Evolutionary G...3928 days ago
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Tags
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions...Tags: Whole genome, NGS, Genome, Scaffolds, pan-genome, Evolution, Alignments, Compare
3004 days ago
Comments
Comment on "Short-read assembly using Spades !"
Short-read asse...the process of constructing a genome sequence from a large number...reads. SPAdes (St. Petersburg genome assembler) is a popular softw...directory where the assembled genome will be saved, "forward_reads...and accuracy of the assembled genome by comparing it to reference...400 days ago
- ...sed short read simulator that generates synthetic reads based on the whole genome sequencing technology. It ca...sim is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is design...
400 days ago
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