Results for "accurate"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ions are: SyntenyTracker ( http://www-app.igb.uiuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool for defining H...2600 days ago
List of gene ontology software and tools
...microarray hybridization experiments. The main function of GOEAST is to identify significantly enriched GO terms among give lists of genes using accurate statistical methods. http://...3699 days ago
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Bookmarks
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads&n...3214 days ago
- In machine learning, computers apply statistical learning techniques to automatically identify patterns in data. These techniques can be used to make highly accurate predictions. More at http://www.r2d3.us/visual-intro-to-machine-learning-part-1/
3193 days ago
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Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal...1909 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...MappingRMAP is aimed to map accurately reads from the next-generat...ficiently – and especially accurately. That is, without actually...ssemblerVGA is a method for accurate assembly of a heterogeneous v...o contigs. It is a very fast and accurate DNA sequence assembly softwar...2675 days ago
Top-level pages
- ...r) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DN Glimmer HMM A fast and accurate gene finder based on a GHMM a...
3932 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...cz & Grabowski, Bioinformatics 27(6):860-2, 2011. PubMed Fast and accurate short read alignment with Bur...upp1):S52, 2011 PubMedCentral [requires a reference sequence] HiTEC: accurate error correction in high-thro...3769 days ago
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Wire posts
News
- ...atively increases the size of the k-mers by one base until the repeats are eliminated. This ensures that the final assembly of the exon is highly accurate while minimizing compute time...
3536 days ago
- .... By combining intelligent data reduction techniques and latest next generation sequencing technologies, our service portfolio provides most accurate and cost efficient solutions...
3626 days ago
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Opportunity posts
Human Genome Meeting 2014, Geneva, Switzerland
...ith the enormous challenges of assigning pathogenicity to each genomic variant, the functional analysis of the genome of each individual, and the accurate and detailed phenotypic chara...3869 days ago
- ...atoid Arthritis and normal individuals. This work will eventually lead to the development of a novel diagnostic platform for the non-invasive and accurate detection of early Osteoarthr...
3771 days ago
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ResearchLabs posts
- ...f central carbon and energy metabolism in quantitative terms (2) Synthetic metabolic pathways for carbon fixation (3) Novel tools facilitating accurate, accessible and collaborative...
3898 days ago
- Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure gen...
3498 days ago
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Fun
The Best Bioinformatics / Computational Biology Quotes
...nd protein. Warning! Your genome is full of garbage, delete it ! Bad or missing mouse genome. Spank the cat? (Y/N) Genome make very fast, very accurate mistakes. Let's BLAST it. S...3710 days ago
Video
Drew Berry: Animations of unseeable biology
....com We have no ways to directly observe molecules and what they do -- Drew Berry wants to change that. At TEDxSydney he shows his scientifically accurate (and entertaining!) animation...3699 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...ng readsBy BioStar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS technologies have been used to produce highly accurate de novo assemblies of hundred...1501 days ago
Tadpole is 250x faster than SPADes assembler !
...ith average coverage below this. trimends=0 (trim) Trim contig ends by this much. Trimming by K/2 may yield more accurate genome size estimation. cont...966 days ago
Tags
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. Consistently very high sensitivity and precision ...Tags: GraphMap, sensitive, accurate, mapper, long, error-prone, reads
2514 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.Tags: INC-Seq, accurate, single, molecule, reads, nopore, sequencing
2340 days ago
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Comments
Comment on "URMAP, an ultra-fast read mapper"
...umber of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somewhat less accurate. To get the full speed improv...1273 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate...ed as unmapped. This value can be lowered if the reads are known to be accurate. [80] --minimizer-window INT...2282 days ago
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