3927 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...cz & Grabowski, Bioinformatics 27(6):860-2, 2011. PubMed Fast and accurate short read alignment with Bur...upp1):S52, 2011 PubMedCentral [requires a reference sequence] HiTEC: accurate error correction in high-thro...3764 days ago
List of In-silico Binding Site Prediction Tools
.... The FunFOLD Binding Site Residue Prediction Server: BACKGROUND: The accurate prediction of ligand binding...is still a great need to explore newer methods and concepts to develop accurate, versatile and efficient bind...3728 days ago
Commercial and public next-gen-seq (NGS) software
...ssemble to a reference BFAST - Blat-like Fast Accurate Search Tool. Written by Nils...per is a short read mapping tool designed for accurate read alignments. It quickly a...post-analysis. ZOOM is developed to be highly accurate, flexible, and user-friendly...3503 days ago
Software packages for next gen sequence analysis
...emble to a reference * BFAST - Blat-like Fast Accurate Search Tool. Written by Nils...per is a short read mapping tool designed for accurate read alignments. It quickly a...post-analysis. ZOOM is developed to be highly accurate, flexible, and user-friendly...3227 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...sample level and to the tumor-normal pair level; "pending public release" Input: Output: CLImAT Description: standalone program; “accurate detection of copy number alte...2893 days ago
Genome Assembly Tools and Software - PART1 !!
...The contigs produced by Rnnotator are highly accurate and reconstruct full-length g...SAT-Assembler 20160120 – Scalable and Accurate Targeted Gene Assembly Tool...earrangements CAR is an efficient and more accurate tool for assembling contigs o...2670 days ago
Tools to Predict the Impact of Missense Variants !
...tive evaluations of predictors that do not address these types of circularity may erroneously conclude that circularity confounded tools are most accurate among all tools, and may even...2188 days ago
LINKS scaffolder bloomfilter setting !
...caffold (default -l 5, optional) -a maximum link ratio between two best contig pairs (default -a 0.3, optional) *higher values lead to least accurate scaffolding* -z minimum con...2135 days ago
List of non-commercial NGS genotype-calling software
...ngful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on the accurate calling of SNPs and genotypes...2081 days ago