Results for "alignment"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found tha...1131 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to refe...ing(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy co...1131 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3895 days ago
- ...IP-Seq In this protocol we discuss ChIP-Seq: a method to analyze the interaction between proteins and DNA. Amplicons Protocol Amplicon Alignment In this protocol we discus...
3638 days ago
A Brief Bioinformatics Tutorial
...tein sequence, how to blast it against the database of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structure part is about...3621 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ly, genome annotation, gene finding, alternative splicing, EST analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clusteri...3483 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSC...
1077 days ago
Alignment of closely related whole genomes/scaffolds
...udy of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments. Please report new whole genome alignment tools under comment sections.3004 days ago
- ...Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identify inconsis...
2993 days ago
- ...structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as...lized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly p...
2993 days ago
