Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software
2844 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics
2842 days ago
Tags: Bioinformatics, Analysis, NGS, Scaffolding, Scarpa
2836 days ago
Tags: Bioinformatics, Analysis, NGS, Scaffolding, WiseScaffolder
2836 days ago
Tags: Bioinformatics, Analysis, NGS, Taxonomy, Functional Analysis
2824 days ago
Tags: Bioinformatics, Analysis, NGS, Genome STRiP, Genome, Variation
2781 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginners to use, but VAGUE makes it clear and simple More at http://www.vicbioinformatics.com/software.va...Tags: Bioinformatics, Analysis, Assembly, Genome, VAGUE, Plot, View, Valvet
2610 days ago
Tags: Bioinformatics, Analysis, NGS, CrossMap, Genome, Coordinates
2782 days ago
Tags: Bioinformatics, Analysis, NGS, Valet, Genome
2765 days ago
Tags: Bioinformatics, Analysis, NGS, OrganellarGenomeDRAW, Draw, Genome, OGDRAW
2802 days ago