Tags: Bioinformatics, Analysis, Graph, JavaScript, GoJS, Plot, HTML
2711 days ago
Tags: Bioinformatics, Analysis, Alignment, Synteny, Spines
2705 days ago
Tags: Bioinformatics, Analysis, CNV, EXCAVATOR2, tool, NGS
2703 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tool...Tags: Bioinformatics, Analysis, NGS, e-RGA, Genome, Assemble
2684 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Minia, NGS, de Bruijn
2695 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, SGA, NGS
2695 days ago
Tags: Bioinformatics, Analysis, NGS, fqtools, FASTQ
2695 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, ad...Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, standardized-velvet-assembly-report
2694 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial
2694 days ago
Tags: Bioinformatics, Analysis, Assembly, NGS, Cutadapt
2689 days ago