Results for "ancestral"
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...chromosome number proceeds. For each model, the program estimates the rates for the possible transitions assumed by the model, infers the set of ancestral chromosome numbers, and estim...3371 days ago
- ...tion of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the transferred sequence from ancestral (vertically derived) genes in...
2857 days ago
- ...browser that can represent and compare unlimited numbers of genomes in a broad phylogenetic view. In addition, Genomicus includes reconstructed ancestral gene organization, thus great...
2680 days ago
DeCoSTAR - Detection of Co-evolution
...R is a software which aims at reconstructing ancestral gene or genome organizations,...ood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestr...DeClone. It provides statistical supports on ancestral adjacencies, or the possibili...2561 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this met...2527 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 ...2527 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...equences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the internal nodes...etely or partially, in the latter case MGRA can reconstruct conserved ancestral regions (CARs) of the ancestr...2459 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...gous and paralogous copies in all the other sequenced metazoan genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenet...2342 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony...2235 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...algorithm, called DUPCAR, for reconstructing ancestral genomic orders with duplicati...greedy algorithm is used to reconstruct the ancestral orders by connecting genes in...e also applied the method to reconstruct the ancestral chromosome X of placental mam...2159 days ago
