Results for "annotation"
Blogs
Five points for bioinformatics software/tools
...of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end, I would like to...3689 days ago
Tools to detect synteny blocks regions among multiple genomes
...of study species by comparing to a well annotated reference sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia (http://arxiv.org/...2591 days ago
List of gene ontology software and tools
...ve compilations of gene product annotations to these ontologies that pro...nctions about GO structures, GO annotations, and what can and can not be...ysis). Also EasyGO is also a GO annotation database, especially focus on...biomedical researchers, in the annotation of gene products with terms f...3691 days ago
Structural variation: the hidden genomic treasure
...th of read mapping.2011a,2011b AGEa tools that implements an algorithm for optimal alignment of sequences with SVs.2011 BreakSeqa pipeline for annotation, classification and analysis...2684 days ago
List of motif discovery tools !
...AFAWE -- Automatic functional annotation in a distributed Web Services...search for catalytic residue annotation for enzymes in the Protein Da...ucture Search for functional annotation of important sites in protein...mation about protein sequence annotations. PAR-3D -- Protein Acti...1974 days ago
Bioinformatics tools for telomere to telomere assembly !
...cute;n de Hegedüs @rocioadh)● tama (Transcriptome Annotation by Modular Algorithms) &ndash...f long transcriptomic reads to a genome, guided by a database of exon annotations. (Kristoffer Sahlin @kr...973 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...GV - http://www.broadinstitute.org/igv/ Automated and semi automated annotation tools:Prokka - https://github...tseemann/prokkaRAST - http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/RapidAnnotationServerJCVI Annotation Service...1186 days ago
Ancient whole genome duplication (WGD) detection tools !
...ne genome Saccharum spontaneum L as an example. The genome is 8-ploid with 32 chromosomes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files mkdir -p wgd_tutoria...1137 days ago
Frequently used bioinformatics tools for viral genome analysis !
...stical computing. R Core Team (2013). R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/. RATT: RATT: Rapid Annotation Transfer Tool. Otto, T. D., D...1028 days ago
Illumina based assembly pipeline steps !
...data || BCFTools, BEDTools; default for metagenomics data) Variant annotation (SnpEff, SnpSift) Consensus...uence quality checks (Nextclade) Individual variant screenshots with annotation tracks (ASCIIGenome) Int...858 days ago
