Results for "annotation"

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  • Next Generation Sequencing (NGS) Tutorials

    ...12/134/abstract WEP: a high-performance analysis pipeline for whole-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud computing-b...

    3450 days ago

  • Public Databases for Bioinformatics !

    ...ssible data should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont...iles/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.a...

    1102 days ago

  • Bioinformatics Protocols

    ...n allow more control over branching and iteration logic. WGS/exome GATK-based variant calling pipeline This is a basic variant-calling and annotation pipeline developed at the Vic...

    3616 days ago

  • Orione – a web-based framework for NGS analysis in microbiology

    ...microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, th...

    3537 days ago

  • 7th International Conference on Bioinformatics and Computational Biology (BICoB)

    ...e not limited to): Genome analysis: Genome assembly, genome annotation, gene finding, alternative sp...sequence databases, Peptide quantification and identification, Genome annotations via mass spectrometry, Ident...

    3462 days ago

  • JCVI utility libraries

    Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.

    1055 days ago

  • MAKER

    MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryo...o gene predictions and automatically synthesizes these data into gene annotations having evidence-based qualit...

    2973 days ago

  • BUSCO

    Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/

    2973 days ago

  • RATT

    RATT is software to transfer annotation from a reference (annotated) ge...was first developed to transfer annotations between different genome ass.... However, it can also transfer annotations between strains and even dif...tion would be lost in a de novo annotation. More at http://ratt.sourcef...

    2973 days ago

  • CrossMap

    CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (...

    2972 days ago