Results for "annotation"

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  • Genome Annotation using MAKER tutorial !

    MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to...

    Tags: Genome, Annotation, MAKER

    1925 days ago

  • chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes

    Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addit...

    Tags: chromoMap, R, package, Interactive, Visualization, Annotation, Chromosomes

    1813 days ago

  • FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies

    FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in genomic areas identified by lead SNPs. The GENE...

    Tags: FUMA, GWAS, Functional, Mapping, Annotation, Genome-Wide, Association, Studies

    1763 days ago

  • chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes

    chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the chromosome plot.Each chromosome is composed of loci(representing a specific range determined based on ...

    Tags: chromoMap, R, Interactive, Visualization, Annotation, Chromosomes

    1665 days ago

  • WEGO : simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results

    WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many researches. Therefore we have updated WEGO 2.0 in 2018. H...

    Tags: WEGO, Web, Gene, Ontology, Annotation, Plot, tool, visualizing, plotting, GO, Gene, Ontology, annotation, results

    1447 days ago

  • #Eukaryotic #genome #annotation http://www.webscipio.org/help/scipio #scipio #pipeline

    Tags: Eukaryotic, genome, annotation, scipio, pipeline

    3043 days ago

  • Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

    Tags: Prokaryotic, genome, assembly, annotation

    2580 days ago

  • Web Apollo: a web-based genomic annotation editing platform

    Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to desc...

    Tags: Web, Apollo, genomic, annotation, editing, platform

    2436 days ago

  • DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

    We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server, and to date, over 7,000 jobs have been processed since its first launch in 2016. Here, we present a newly ...

    Tags: DFAST, flexible, prokaryotic, genome, annotation, pipeline, faster, genome, publication

    2327 days ago

  • dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, de-novo, assembly, annotation, Pipeline, Transposable, Elements

    2308 days ago