Results for "assembler"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...enome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a huma...Readjoiner: a fast and memory efficient string graph-based sequence assembler. Gonnella & Kurtz, BMC Bi...3764 days ago
Commercial and public next-gen-seq (NGS) software
...mble ABySS - Assembly By Short Sequences. ABySS is a de novo sequence assembler that is designed for very sho...f whole-genome shotgun microreads. ALLPATHS is a whole genome shotgun assembler that can generate high qualit...3503 days ago
Software packages for next gen sequence analysis
...le * ABySS - Assembly By Short Sequences. ABySS is a de novo sequence assembler that is designed for very sho...f whole-genome shotgun microreads. ALLPATHS is a whole genome shotgun assembler that can generate high qualit...3227 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...2Kplus2 Description: algorithm searches graphs produced by de novo assembler Cortex; c++ source code for S...nucleotide polymorphisms in transformed De Bruijn graphs using Cortex assembler.” Input: Output:...2893 days ago
Genome Assembly Tools and Software - PART1 !!
...amp; Analysis DNA Sequence Assembler is revolutionary bioinformati...BinPacker is a novel de novo assembler by modeling the transcriptome...SATRAP 0.2 – SOLiD Assembler TRAnslation Program A co...ut. StriDe – novel Assembler The StriDe Assembler integ...2670 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ation long and noisy reads (10 kbp) using a dimensionality reduction technique MinHash Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ON...2355 days ago
- ...ades.py This produces: SPAdes genome assembler v3.10.1 Usage: /usr/local/...rror correction (without assembling) --only-assembler runs only assembling (...\ -k 31,51,71 \ --only-assembler \ -1 miseq.1.fastq...
2335 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read s...assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a con...2314 days ago
Some useful Bioinformatics links
...ft.cbrc.jp/alignment/software/tips.html Omega | Overlap-graph de novo Assembler for Metagenomics https://ome...threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler https://github.com/abiswas-o...2226 days ago
Bioinformatics tools for genome assembly !
...September 2021: SPAdes: An assembler specifically designed for sin...omes. ABySS: A parallelized assembler for large genomes that uses d...genomes. MaSuRCA: A hybrid assembler that combines data from multi...enomes. Unicycler: A hybrid assembler that combines short and long...270 days ago
