Results for "assembler"
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Comment on "Short-read assembly using Spades !"
...hort-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a popular software tool f...404 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...409 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...a perfect mapping file, and create a perfect mapping called <assembler>_perfect. This should take...d with perfectmap and create an output file called <assembler>_smalt.bam. This should ta...1325 days ago
Comment on "Sequence assembly with MIRA 4"
MIRA5 is ready to use http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html1522 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1538 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1938 days ago
Comment on "Long read assembly workshop !"
Long reads assembler https://zenodo.org/record/345098/files/scientific_reports_assembly_long_reads%282%29.pdf2028 days ago
Comment on "SPAdes hybrid genome assembly"
...takes up lots of RAM, so we are going to skip it. We will also only use 3 kmers to save time: ./SPAdes-3.6.2-Linux/bin/spades.py --only-assembler -t 4 -k 21,51,71...2163 days ago
- Canu is one of the best de novo assemblers available for long reads - it’s a fork and updated version of the Celera assembler that was used to assemble the...
2163 days ago
- Common usage SPAdes: de Bruijn graph based assembler The last assembler we will run is SPAdes. SPAdes is different from the other assemblers in that it generates a final assembly fr...
2332 days ago
