Results for "assemblies"
Comments
...enome: $ ./fastANI -q [QUERY_GENOME] -r [REFERENCE_GENOME] -o [OUTPUT_FILE] Here QUERY_GENOME and REFERENCE_GENOME are the query genome assemblies in fasta or multi-fasta forma...1082 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...a perfect map to the reference. Reapr is finicky though, and can’t use libraries with different read lengths, so you’ll have to use assemblies based on the raw data for thi...1318 days ago
- ...is directory is created if needed. It is not possible to run multiple assemblies in the same directory. The g...r - The allowed difference in an overlap between two corrected reads. Assemblies of low coverage or data with...
2080 days ago
Comment on "Running Trinity on RNA-seq !"
...ctionally annotate the transcripts using Trinotate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for gene structure annotation...2104 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do not have a correction or consensus step, and therefore the resulting assemblies are contiguous (i.e. long) bu...2156 days ago
Comment on "Software packages for next gen sequence analysis"
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data MaGuS (Map-GUided Scaffolding) is a scaffolder and a reference-free ev...2889 days ago
- ...tool converts genome coordinates and genome annotation files between assemblies. The input data ca...d into the text box, or uploaded from a file. If a pair of assemblies cannot be selected from the p...
2990 days ago
Comment on "Software packages for next gen sequence analysis"
DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. This could be a nice tutorial for genome assemblies with overlapping sequences http://www.lynnon.com/pc/assembly.html3221 days ago
Comment on "Software packages for next gen sequence analysis"
Genome assemblies tool and related papers at http://www.plosone.org/browse/Sequence+assembly+tools?startPage=53&filterAuthors=&filterSubjectsDisjunction=&filterA...3223 days ago
