Results for "assembly"
Blogs
Five points for bioinformatics software/tools
...ot absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3698 days ago
Dynamic chromosome breakpoints !!!
...yribonucleic acid (DNA) goes through a condensation and decondensation process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chro...3543 days ago
Software and Tools to detect structure variation with long reads !!
...genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV va...2598 days ago
String graph based genome assembly software and tools !
...ospective of long lasting genome assembly problem ii) the paper is...squo;. Following are the genome assembly tools based on string graph:...n to the user at the start of an assembly project, this software will h...g papers - i) The Fragment Assembly String Graph - E. W. Myers T...2319 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...f ONT data is the read length, which offers great prospects for genome assembly. Generally, assemblers are ba...ac.ac.uk/display/NANOOK/NanoOK NanopolishNanopore analysis and genome assembly softwarehttps://github.com/jt...2311 days ago
BBTools for bioinformatician !
...verage is decided on a per-reference-sequence level, so if a bacterial assembly has more than one contig, you...4000bp jump library from your existing data like this. Code: $ cat assembly1.fa assembly2.fa > combine...2261 days ago
- ...e three use cases: (1) Convert genome position from one genome assembly to another genome assembly In most scenarios, we have k...ig on hg19 that is not anymore mapped on GRch38 because the new assembly is now better built without i...
2150 days ago
- ...# --no_distributed_trinity_exec :do not run Trinity phase 2 (assembly of partitioned reads), and st...! ) # # --workdir :where Trinity phase-2 assembly computation takes place (defa...
2124 days ago
CANU genome assembly parameters !
...priate parameters to run Canu and run it. The assembly will take about an hour. You...p;Canu run produces usually high quality assembly, example of a command that wa...nformations about read inclusion in the final assembly *.gfa : file containing...1935 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v....sh (v. 0.8.3) I have used the following tools to assess genome assembly characteristics ANI.pl&nbs...1920 days ago
