Results for "assembly"

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  • Comparison of Short Read De Novo Alignment Algorithms

    Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms  Author: Nikhil Gopal

    Tags: Sequencing, assembly, de novo assembly, velvet

    1647 days ago

  • Genome Assembly & Analysis Tool Box (GATB)!! http://gatb.inria.fr/ #genome #assembly

    Tags: genome, assembly

    1231 days ago

  • De #Bruijn #Graph #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf

    Tags: Bruijn, Graph, assembly

    603 days ago

  • #Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

    Tags: Contiguous, accurate, assembly, metazoan

    361 days ago

  • Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

    Tags: Overlap, Consensus, assembly, OLC, Assembly

    356 days ago

  • Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

    Tags: Prokaryotic, genome, assembly, annotation

    354 days ago

  • Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

    Tags: assembly, Tutorial, MIRA, IonTorrent

    328 days ago

  • All about #newbler #assembly https://contig.wordpress.com/ #NGS

    Tags: newbler, assembly, NGS

    268 days ago

  • Omega2: metagenome assembly pipeline

    Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using m...

    Tags: Omega2, metagenome, assembly, pipeline

    228 days ago

  • Unicycler: Hybrid assembly pipeline for bacterial genomes

    Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible asse...

    Tags: Unicycler, Hybrid, assembly, pipeline, bacterial, genomes

    105 days ago