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  • AWK for beginners !

    AWK is a standard tool on every P...scripting language. Why use AWK instead of Perl? Readability....There is an implied loop and AWK automatically reads and parse...articularly useful to prevent AWK from assuming the arguments...localvar, arr) { # AWK, being a string-processing la...

    1797 days ago

  • Run bash script in Perl program !

    ...;my $in, 'command', 'arg1', 'arg2'); 5.a2p syntax: a2p [options] [awkscript] There is a Perl utility known as a2p which translates awk command to Perl. It takes awk...

    599 days ago

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  • zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

    3608 days ago

  • Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

    2106 days ago

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  • Awk

    Awk

    Awk is widely used these days for extracti...logical data in Unix/Linux.Most of the awk code is single liner. Useful...eblinks: http://www.grymoire.com/Unix/Awk.html http://www.hcs.harvard....t http://www.math.utah.edu/docs/info/gawk_5.html http://www.osnews.com...

    3881 days ago

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