List of Bioinformatics Software Tools for Next Generation Sequencing
...esigned to run on “nux-like platforms” Input: BAM Output: VCF KvarQ Description: in silico genotyping for selected loci in bacterial genome, written in Python and...2871 days ago
Genome Assembly Tools and Software - PART1 !!
...er seeks to close the gap from each edge in an iterative manner. From a good number of tests we see the program yields excellent results both on bacterial en eukaryotic datasets....2648 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...edu/~fsun/Programs/NGS-MC/NGS-MC.html Species identification/taxonomic profiling CLARK Taxonomic classification of metagenomic reads to known bacterial genomes using k-mer sear...2333 days ago
Tools for bacterial whole genome annotation
...NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromos...d or use outside of the NCBI environment. BEACON (automated tool for Bacterial GEnome Annotation ComparisON)...2294 days ago
Some useful Bioinformatics links
...nd Genomics http://evomics.org/learning/genomics/satsuma/ A complete bacterial genome assembled de novo usin...quences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacterial draft genomes using long read...2203 days ago
Bioinformatics tools for genome assembly !
...ally designed for single-cell and multi-cell bacterial genomes, as well as small euk...Flye: A long-read assembler suitable for bacterial and small eukaryotic genomes....t combines short and long reads for circular bacterial genome assembly. wtdbg2:...248 days ago