Results for "benchmarking and designing tools"
Users
Interests: benchmarking and designing tools1286 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you nee...it. That will be very painful and annoying task. I recommend th...ssing parameters...CPAN build and cache...e as follows: bioperl - Perl tools for computational molecular b...rl wrappers: moduleslibbio-samtools-perl - Perl interface to SamT...3940 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biologi...o learn non-technical skills, and have an open mind to sources..., but I have other priorities and can’t make work my life.&...ited about your research, the tools and technology you are using,...3940 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3935 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse th...scale genomics datasets. But we need to understand the b...informatics: assembling genomes, comparing DNA and protein sequences, predicting g...
3934 days ago
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Files
- ...d to open file temporarySamsamtools sort: can't open "temporary...ex -p all_p_ctg.fa /home/urbe/Tools/OPE...ads -advanceExactMatches 1 -nCandidates 1 -maxAnchorsPerPosition...llONT/allONT.fasta /home/urbe/Tools/OPERA-LG_v2.0.6/all_p_ctg.fa...93.readline() on closed filehandle FILE at bin/OPERA-long-read.p...
2141 days ago
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways ...s I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was e...nformatics work that is math heavy and deals with a large amount of da...3941 days ago
- I'm new to bioinformatics and recently started learning Perl. I found severa...h confuse me at the begining. I google it and found that Strawberry comes with additional dev tools to...In addition, DWIM Perl contains the standard Perl and a lot of extension...
3905 days ago
Pages
Bio++ : C Language libraries for your biological need
...mes with a genuinely useful standard library that can itself be implemented in C, and it is both efficient and port...kov Models,Improved numerical tools (nu...(beta). Molecular evolution tools Parameter estimation under m...deal with codominant markers and bio-sequence data for individua...3937 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an...versity(Bioinformatics Center) and the O...ject was started in late 2000, and is still in progress. Currently...3937 days ago
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Top-level pages
- ...easing genome sequencing cost and desire to explore and understand biological machani...rough advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological...e language are not enough to handle all sort of biological needs,...
3937 days ago
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Na...oblem are errors in databanks and databases (mostly errors in ann...analysis with bioinformatics tools are necessary to arrive from...rgies of different protein ligands) can be characterized by MD si...
3937 days ago
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Wire posts
News
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drugs and drug targets- Improved interface for 3D...Jmol/JSmol- An update to the representation of protein symmetry and stoichiometry.- Improvements wh...
3884 days ago
OSDDlinux : Computational resources for drug discovery
Open Source Drug Discovery (OSDD), a mission to provide affordable d...reating an in silico plateform for designing, discovering and simulating drugs. OSDD have i...rug discovery, including OSDDlinux and computational resources for drug di...drug design. This is a collection and c...3867 days ago
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Opportunity posts
- School of Biotechnology Gautam Buddha University Greater Noida, UP - 201310...esearch project entitled “Design, synthesis and evaluation of potent aminopep...Qualification: Preference will be given to candidates having research experience in in silico drug desig...
3938 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate)...ship project aiming at understanding and improving the adaptive capaci...of the comparison of multiple and diverse genomes of a same spe...eness of complex genomes. The tools wil...has computational facilities and expertise in NGS data analysis,...3938 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such...ch causes malaria in humans, have provided new tools for discovery in biology and have accelerated the development of understanding in human disease. Researc...
3938 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biological systems using computational biology and bioinformatics techniques. We...mics data like genome sequence and transcript profiles. We are i...open-source biological pathway and netwo...network databases and analysis tools Link @ http://baderlab.org...3937 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...In this new field, computers and techniques from information science are not just used as tools to advance life science res...contains genetic information, and this is called the genome. Bu...s inversions, transpositions, and dupli...mutations that cause cancer, and the genome of the natto product...3907 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insights into Disease...'s lab at Stanford University builds and applies tools tha...ogical data (measured by researchers and clinicians over the past decade...3900 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1207 days ago
- ...groupinstall -y 'Development Tools' sudo yum install -y expat...t to install different Perls, and cd into it: # Note that it d...l into a subfolder named src, and untar...l API, VEP, OncoKB, and other tools we use here at MSKCC: curl -...5LIB to find these libraries, and set $PATH to use this Perl inst...
2134 days ago
- +37 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or...to do de-novo assembly, map reads, align reads, and expression analysis. Recommenda...3520 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resul...enome projects, next generation sequencing and other...s' techniques. Bioinformatics provides the tools to analyse and exploit such d...3406 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM...a result, it provides strong and flexi...will be developing effective tools to eliminate manipulated data...t of a tool/software but do a benchmarking test for each of the t...2352 days ago
Groups
R is a free software programming language and a software environment for statistical computing and graphics. The R language is w...dely used among statisticians and data miners for developing st...lability of huge genomic data and biolo...ckages. Bioconductor provides tools for the analysis and comprehe...3941 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented program...es. It was also influenced by Eiffel and Lisp. Ruby was first designed and developed in the mid-1990s by...alysis, alignment, database parsing, tools for structural biology, and other Bioinformatics. BioRuby i...3910 days ago
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Tags
- PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.
Tags: Bioinformatics, algorithms, pipelines, benchmarking and designing tools
1286 days ago
