Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline2919 days ago
QUAST: quality assessment tool for genome assemblies
...accepts multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long2912 days ago
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...nes and RNA) and annotating their functions. Recently, in order to make RAST a more useful research tool and to keep pace with advancements in bioinformatics, it has become desirable to b...2892 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
..., E., Alföldi, J., Di Palma, F., & Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics, 26(9), 1145-51. Tutorial at...2876 days ago
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Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series...ogle Group) Bpipe has been published in Bioinformatics! If you use Bpipe, please cit...A, Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics...2867 days ago
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CNIDARIA: fast, reference-free phylogenomic clustering
...at http://www.ab.wur.nl/cnidaria. Contact: Saulo Aflitos - sauloal@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online....2841 days ago