Results for "blast"
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A Brief Bioinformatics Tutorial
...e tutorial is divided in three main parts: In the Sequence part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3621 days ago
YASS :: genomic similarity search tool
...ext format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2909 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...mers, Kraken achieves classification accuracy comparable to the fastest BLAST program. In its fastest mode,...a rate of over 4.1 million reads per minute, 909 times faster than Megablast and 11 times faster than the...2853 days ago
- ...t, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subset of the non-redundant protein database nr used by NCBI BLAST, optionally also including fu...
2853 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. &n...2845 days ago
- ...scripting skills required. Powerful. MEGAN6 allows you to work with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be performe...
2825 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be use...2793 days ago
BLAST Ring Image Generator (BRIG)
...=328245. Features: Images show similarity between a central reference sequence and other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing...2758 days ago
- ...s. PhymmBL (rhymes with "thimble"), the hybrid classifier included in this distribution which combines analysis from both Phymm and BLAST, produces even higher accurac...
2748 days ago
Standardized velvet assembly report
...all.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments again...If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb....2688 days ago
