Phylogenetic for Bioinformatics
...hese substances, while the molecules of organisms distantly related usually show a pattern of dissimilarity. Molecular phylogeny uses such data to build a "relationship tree" that sh...3909 days ago
Most Commonly used Awk by Bioinformatician
...openbox pipe menu where you want to generate something on the fly. You can use awk to make a neat one-liner for some quick job in the terminal, or build an awk section into a shell s...3875 days ago
Commercial and public next-gen-seq (NGS) software
...en by Hui Jiang from the Wong lab at Stanford. Builds available for most OS's. SHR...s against a range of Refseq RNA or NCBI genome builds for a number of organisms. W...a method aimed at using RNA-Seq short reads to build de novo gene models. First, c...3482 days ago
Software packages for next gen sequence analysis
...en by Hui Jiang from the Wong lab at Stanford. Builds available for most OS's. * S...s against a range of Refseq RNA or NCBI genome builds for a number of organisms. W...a method aimed at using RNA-Seq short reads to build de novo gene models. First, c...3205 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ia web, can fetch data from a URL, build custom pipeline/ workflow has...text files Supports custom genome builds and annotation databases Pe...ses GRch37p4 (hs37d5.fa.gz), dbSNP build 138, 1000G Phase 3, clinvar_2...e most recent site, based on dbSNP build 141, and hg38/NCBI 38”;...2872 days ago
Awesome perl frameworks, libraries and software - PART 1
...sp;- Test2, Test::More, Test::Simple and Test::Builder Perl modules for writing te...Maker - Perl module to make Makefiles and build modules (what backs Makefile....erns. metomi/fcm - FCM: a modern Fortran build system + wrappers to Subversi...2452 days ago
2314 days ago
Bioinformatics Web Application Development with Perl
...gs, but three in particular stand out. You can build web sites and web application...ramework is a flexible and powerful system for building small to large web apps. I...than even clever hand-written code. Because it builds on the Perl DBI, it scales e...2284 days ago
Python learning resources for bioinformatics and computational biologist !
...urpose language, which means it can be used to build just about anything, which wi...ting. Many developers have also used Python to build productivity tools, games, an...tuff - Al Sweigart Biopython (PDF) Build applications in Python the an...2218 days ago
Installing Bio::SCF perl module
...or gcc...Checking for shared library support...Building shared library libz.so.1.2...install... /usr/bin/install -cchecking whether build environment is sane... yesche...ne... inlinechecking for mode_t... yeschecking build system type... x86_64-unknown...2181 days ago