Results for "bwa-gatk"

Wire posts

  • http://bwa-pssm.binf.ku.dk/ #Aligner #NGS

    3486 days ago

  • #GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

    2823 days ago

  • Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

    2305 days ago

  • https://gatkforums.broadinstitute.org/gatk/discussion/1268/what-is-a-vcf-and-how-should-i-interpret-it #VCF #vcf #SNP

    2079 days ago

  • GATK is open source https://software.broadinstitute.org/gatk/ #GATK #Broad

    2006 days ago

  • Analyse your sample with GATK pipeline. https://app.terra.bio/ #GATK

    1518 days ago

  • Conda aligner env $ conda create -n aligners bwa bowtie hisat star #Aligner #Env

    1518 days ago

  • #Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

    1499 days ago

  • (grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

    1499 days ago

  • Useful bioinformatics database for GATK analysis ftp://ftp.broadinstitute.org/bundle/hg38/ #GATK #Database

    1497 days ago