Results for "calling"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found th...1135 days ago
Next Generation Sequencing (NGS) Tutorials
...eqFlow: Workflows for RNA-Seq data analysis DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequenc...3476 days ago
- ...ing the UNIX command line; and often allow more control over branching and iteration logic. WGS/exome GATK-based variant calling pipeline This is a basic variant-calling and annotation pipeline devel...
3642 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...bsp;Genetics and population analysis: Linkage analysis, association analysis, population simulation, haplotyping, marker discovery, genotype calling. Systems biology: S...3487 days ago
Simons Genome Diversity Project
...ated bias of alleles toward matching the human genome reference sequence, and determined genotypes on a single-sample basis to avoid preferential calling of genotypes from populations...1081 days ago
- ...ing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separ...
2976 days ago
- ...was not previously possible. DISCOVAR can call variants on a region by region basis, potentially tiling an entire large genome. DISCOVAR variant calling is under active development a...
2928 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format fo...
2805 days ago
- Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a...
2736 days ago
- ...ments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.
2729 days ago
