Results for "calling"

Bio-Scripts

  • Downloading GATK !

    ...--------------------------- Base Calling:...lidity for specified Illumina basecalling data. CollectIlluminaB...ng reads in a HiSeqX Illumina Basecalling directory into various catego...Tools that perform variant calling and genotyping for short vari...

    2038 days ago

  • Samtools commands for bioinformatician !

    ...-g -f sal_ref_sej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find s...is "call". type "bcftools" to see current version and commands ### calling snp and indels with no freque...

    1566 days ago

  • Corona variant calling steps !

    #!/bin/bash FILE_PATH="data/trimmed_fastq_small/" find "$FILE_PATH" -name "*.fasta" | while IFS= read -r my_file do filename=$(basename "$my_file") basenam...

    1008 days ago