Results for "clusters"
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RNA-Seq De novo Assembly Using Trinity
...nscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de Br...2948 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2877 days ago
- ...ion of functional profiles for genes and gene clustersBioconductor version: Release...ional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <gu...ge for comparing biological themes among gene clusters.” OMICS: A Journal of I...
2862 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM). Currently, there exist two versions of Virtual...1404 days ago
- ...addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing...
2673 days ago
- ...er to assemble large metagenomes from billions of Illumina sequencing reads of complex microbial communities. Disco was parallelized for computer clusters in a hybrid architecture that...
2474 days ago
- RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in populatio...
2445 days ago
orthodotter: Synteny plots (oxford grid)
...------ orthodotter -f Vigne_Banane.ortho -toPlot Vigne:Banane:black:1=10,5 -x 1200 -y 1200 -bg white -o Vigne_vs_Banane.png > Vigne_vs_Banane.clusters ----------------------------...2444 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...ing and do not incorporate effects from more esoteric sources of noise that may be present in real data ("dust", bubbles, merged clusters, sequence-heterogeneous clusters, etc). Many of these addition...2333 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...large datasets by utilizing lightweight data structures and multi-threaded parallelization, allowing to assemble human-sized genomes on commodity clusters in under a day. The process p...2310 days ago
