BOL: Results for "clusters"

Results for "clusters"

- Rahul Nayak@rahul
One page R survival guide !!
There any many of the documents have been developed and tested by scientist around the world. I found this one really useful. The data used is available for download as&...
3254 days ago
- Shruti Paniwala@shruti
List of comparative genomics resources !
...ganisms. ATGC -- Alignable Tight Genomic Clusters Database Find information ab...etection of transcription factor binding site clusters associated with conventional...s pacificus. ProtClustDB -- NCBI Protein Clusters Database Find information ab...
667 days ago

- Surabhi Chaudhary@surabhi
RNA-Seq De novo Assembly Using Trinity
...nscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de Br...
2954 days ago
- Jit@jit.aber
ClueGO
ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2883 days ago
+19 more Bookmarks

- Abhimanyu Singh@abhimanyu
Spades tutorial PDF
...he SPAdes package and that are used for assembly of metagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clusters from whole-genome sequencing...
813 days ago

- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...iol 11(8):R86, 2010 PubMedCentral Galaxy Cloudman: Delivering compute clusters. BMC Bioinformatics 11(Suppl....iol. 11(5):207, 2010 Pubmed Galaxy Cloudman: delivering cloud compute clusters. Afgan et al, BMC Bioinformat...
3769 days ago
- Rahul Nayak@rahul
List of bioinformatics open source projects/software.
...ontinuous Integration tools and techniques in Bioinformatics. It uses Jenkins and its plug-in API to create biology workflows and manage computer clusters. caCORE ontologic r...
3746 days ago
+4 more Top-level pages

- Rahul Nayak@rahul
#Search a #genome sequence for secondary #metabolite biosynthetic gene clusters https://antismash.secondarymetabolites.org/#!/start
1959 days ago
- Neelam Jha@neelam
Cancer poisson distribution https://www.r-bloggers.com/cancer-clusters-and-the-poisson-distributions/ #cancer #poisson
1543 days ago

- Madhvan Reddy@madhvan
The genome factory !!!
...tain billions of nanowells at fixed locations, combined with a new clustering chemistry deliver a significant increase in data density (6 billion clusters per run). Using state-of-the...
3752 days ago
- Shikha Logwani@shikha
Conserved Domain Database (CDD) version 3.11 released
...region on the query sequence, the best0-scoring domain model (if any) from each of CDD’s database providers (Pfam, SMART, COG, TIGRFAMs, Protein Clusters, and the NCBI in-house curati...
3717 days ago

- Aaryan Lokwani@aaryan
Research Fellow @ Mendel laboratory
...lation (artificial knockout, redundancy and lethality analysis, gene set essentiality); (iii) developing of ad-hoc software solutions/routines on clusters of CPUs and GPUs. The corr...
3803 days ago
- Neelam Jha@neelam
Bioinformatic/computational postdoc at South Dakota State University
...rm computational analysis of high throughput, next-generation sequence data and possess the ability to use bioinformatics analytical tools on HPC clusters. Required Qualification...
3696 days ago
+4 more Opportunity posts

- Shruti Paniwala@shruti
Des Higgins: Visualizing Multiple Sequence Alignments
...ments with a very large number of sequences, and presents several approaches to this challenge, including faster algorithms and abstract views of clusters of alignments. This talk was...
3711 days ago

- Jit@jit.aber
Running Trinity on RNA-seq !
...e_trinity.cmds.ok -------------------------------------------------------------------------------- ------------ Trinity Phase 2: Assembling Clusters of Reads --------------------...
2116 days ago
- Jit@jit.aber
Downloading GATK !
...Asserts the provided gzip file's (e.g., BAM) last block is well-formed; RC 100 otherwise ClusterCrosscheckMetrics (Picard) Clusters the results of a CrosscheckFi...
2064 days ago

- Neelam Jha@neelam
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
.../author/recology-r/ Talk introducing phylogenetics in R: http://www.r-bloggers.com/my-talk-on-doing-phylogenetics-in-r-2/ Finding meaningful clusters in trees phytools blog, &ldqu...
3896 days ago