Results for "codon"
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gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on program...n automatically detect and eliminate frameshift mutations and premature stop codons to compute the substitution...2790 days ago
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach tha...2486 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2243 days ago
- ...a given gene sequence encodes amino acids using the most common codons possible, the least common codons possible, or (most typically...ax algorithm works. %MinMax results are averaged over an 18-codon sliding window; hence the res...
2158 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...versity within the class Negativicutes, represented by 31 genomes including 10 genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteome comparis...2067 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...es to contain multiple frameshifts and/or stop codons. MACSE is hence the first au...pseudogenes) without disrupting the underlying codon structure. It has also proved...SEquences accounting for frameshifts and stop codons.Vincent Ranwez, Sébas...1888 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
.... It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculati...1255 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
...several measures of DNA sequence variation within and between populations in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkag...1241 days ago
