BOL: Results for "codon"

Results for "codon"

- Jit@jit.aber
Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution
...cestral sequences; (iii) FastML implements a large array of evolutionary models, which makes it generic and applicable for nucleotide, protein and codon sequences; and (iv) a graphic...
2520 days ago

- Poonam Mahapatra@poonam
Ka, Ks and Ka/Ks calculations
gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on program...n automatically detect and eliminate frameshift mutations and premature stop codons to compute the substitution...
2796 days ago
- Abhimanyu Singh@abhimanyu
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering approach tha...
2492 days ago
+6 more Bookmarks

- Poonam Mahapatra@poonam
Genetic code - Amino Acid
...sists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 ami...e code: most of the amino acids being encoded by more than one codon. The image summarise all in...
3469 days ago
- Neelam Jha@neelam
analyzing codon usage
perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1631 days ago

- Jitendra Narayan@admin
Bio++ : C Language libraries for your biological need
...as been added in the latest version, these are as follows: Support for codon models (including non-homogen...ce and Site objects, with various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word' of a given size)...
3938 days ago

- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...ly 1 download this week → not popular) Input: List of called SNVs and corresponding BAM Output: Report identifying block of mutation within codon (BMCs) mit-o-matic De...
2899 days ago
- Jit@jit.aber
Some useful Bioinformatics links
...m/lh3/fermi Multi-metagenome http://madsalbertsen.github.io/multi-metagenome/docs/step9.html Bandage by rrwick https://rrwick.github.io/Bandage/ Codon Optimization OnLine (COOL): a...
2232 days ago

- Reshma Khatun@reshmakhatun
JRF/SRF at University of Calcutta
...e post of Junior Research Fellow in the DBT(DBT Twinning NER) sponsored project entitled “Protein folding kinetics is a selection force on shaping codon usage bias in the high expres...
3464 days ago

- Nishi Singh@nishi
Concatenate two given sequences, and find the length of the new sequence and also print out the second codon of the sequence
...its length my $DNAlength = length($modifiedDNA); print "Modified DNA: $modifiedDNA has length $DNAlength\n"; #extract the second codon in $modifiedDNA my $codon = substr($modifiedDNA,3,3);...
2907 days ago
- Nishi Singh@nishi
For a given DNA sequence find its RNA transcript, find its reverse complement and check if the reverse complement contains a start codon
...t print "Reverse complement of $DNA is $rcDNA\n"; #look for a start codon in the reverse sequence if($rcDNA =~ /ATG/){ print "Start codon found\n"; } else{ print "...
2907 days ago
+4 more Bio-Scripts