Results for "consensus"
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...embly) or by mapping one type of data to an assembly of other sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data against consensus sequences of other assemblies...2935 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences As...2898 days ago
- ...RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspers...
2801 days ago
- ...assemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-...
2779 days ago
Maq: Mapping and Assembly with Quality
...alib-30.dat where calib-30.dat is contained in maq-data. View the alignment: cd maqdemo/easyrun; maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map Even for adv...2705 days ago
- ...mes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have bee...long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn gr...
2677 days ago
SeqMule: Automated human exome/genome variants detection
...n change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has some built-in functions, such as pooling consensus calls from various callers, p...2600 days ago
Pacbio Long Reads Compatible Software and Tools
...software for PacBio data? Email us. Software categories: De novo assembly Structural Variations Detection Reference-based alignment Consensus and variant calling RNA anal...2592 days ago
CLA: Contig-Layout-Authenticator
...r assembled genomes. Moreover, CLA also hints at probable misassemblies and contaminations, for the users to cross-check before constructing the consensus draft. The CLA pipeline was d...2541 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...pen by the assembler in a draft genome, even when using the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to be corrected by i...2534 days ago
