Results for "consensus"
Blogs
...tree that also contains the target species. For this target species, the algorithm computes nucleotide probabilities at each sequence position. Consensus sequences are then reconstruc...2519 days ago
String graph based genome assembly software and tools !
...reverse validation to remove the branches based on read coverage and paired-end information, resulting in high-quality consensus sequences of reads sharing the seeds. Such consensus sequences are then extended t...2318 days ago
- +6 more Blogs
Bookmarks
- ...embly) or by mapping one type of data to an assembly of other sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data against consensus sequences of other assemblies...
2940 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences As...2903 days ago
- +30 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...emical distance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment....hm).Mixed distance/ML tree reconstruction (iterative approaches).Tree consensus methods, bipartitions, bootst...3937 days ago
Genome Assembly Tools and Software - PART2 !!
...Illumina PCR-free fragment reads. SeqCons 1.0 – de novo and reference-guided Sequence Assembly SeqCons (Sequence consensus) is an open source consensus computation program for Linux...2675 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...ased drug design. Many computational methods for the prediction of ligand-binding sites have been developed in recent decades. Here we present a consensus method metaPocket, in which t...3733 days ago
Next generation sequencing in R or bioconductor environment
...owing sample code uses the test data set from the above BayesPeak package in order to compare the results from both methods by identifying their consensus peak set. Documentation [ Pub...3614 days ago
- +13 more Top-level pages
Wire posts
News
- ...will highlight the UMI-friendly features of Strand NGS v3.1 including support for handling well known and customised UMI libraries, QC metrics, consensus alignment, UMI-based family s...
2360 days ago
Video
- ...egory: Wednesday Afternoon Lectures Description: There is a broad consensus that cancer is the result of...driven by mutation and selection. Genomics has resulted in a parallel consensus that the central functions of...
3862 days ago
Bio-Scripts
Create genome scaffolding with Perl
...return(scalar(reverse($seq))); } sub getConsensus { my ($b1, $b2) = @_; i...)){ ## equal bases, or absent bases, so consensus is easy return($b1);...lacementSeqs{$sName}{score}) && ($consensusLength > $replacementSeqs{$sNa...2297 days ago
Perl script to create a consensus of nucleotide sequences !
...warnings; my @instances = qw ( AAAAA ATCGA ATAAA ); my @instances2 = qw ( AAAAA AACGA ATAAA AGAAA AGAAA); print consensus(@instances),"\n"; # ATAAA print consensus(@instances2),"\n"; # AT...2021 days ago
Tags
Comments
Comment on "Nanopolis: polish a genome assembly"
...mtools index reads.sorted.bam python nanopolish_makerange.py draft.fa | parallel --results nanopolish.results -P 8 \ nanopolish variants --consensus -o polished.{1}.vcf -w {1} -r...2088 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...ds) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do not have a correction or consensus step, and therefore the resul...2164 days ago
- +2 more Comments
