2925 days ago
Computer simulation of genetic mechanism !!
...rojects/gemsim/ GeneArtisan Simulation of Markers in Case-Control Study Designs http://www.rann...sample.org/ HAPGEN A simulator for the simulation of case control datasets at SNP markers https...2938 days ago
Installing Perl environment on Linux
...rc $ plenv install 5.18.1 -Dusethreads $ plenv rehash $ plenv global 5.18.1 $ plenv install-cpanm git is a distributed revision control and source code management so...2284 days ago
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India's own first drug - from Biocon.
...king on it for nearly a decade. The work had initially started in a joint effort with the Center of Molecular Immunology, Havana, but Biocon took control of the programme soon after a...3883 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3831 days ago
Linux SSH Client Commands for Bioinformatics
...remotehostii. Now you are connected to the remotehost: remotehost$iii. To come back to the localhost temporarily, type the escape character ~ and Control-Z. When you type ~ you will n...3668 days ago
Genome Assembly Tools and Software - PART2 !!
...sion) is a stand-alone program for scaffolding pre-assembled contigs using paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By u...2648 days ago
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Surrogate Variable Analysis (SVA)
...008 PNAS), (2) directly removing known batch effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv)....3438 days ago
Bioinformatics PhD studentship available in New Zealand
Bioinformatics PhD studentship available in New Zealand The importance of transcriptional control has been explored in a burgeoning line of research over several decades; neverthel...3911 days ago
4 positions in high throughput computational metagenomics and systems biology of natural products
...h-throughput-computational-metagenomics-and-systems-biology-of-natural-products-deadline-September-30th-2013/Post-doc-in-Modeling-transcriptional-control-programs-at-a-genome-wide-sca...3874 days ago
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DNA is packaged in a chromosome experiment
...a series of successively higher order structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene e...3839 days ago
Genetics, epigenetics and disease
...ut its significance is still not fully understood. While most human genes have been identified, there is much to learn about the DNA signals that control them. This lecture described...3836 days ago
Blast result parser with Perl and Bioperl
...print OUT "%\n"; $hspcount++; } $count++; # flow control for the number of hits needed...2877 days ago
Perl script introduces control structures, arrays and hashes.
...way of getting size: $another_way_of_getting_size_of_array\n\n"; # Control Loop: for for (my $i=0; $i...of seqs' => 2 ); print $sequence{'DNA'}, "\n"; # Control Loop: foreach foreach my $...2825 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...tics. Besides, a researcher in the field of bioinformatics (from any branch) must always be good about the environmental control. In other words, one should always easily control input output directories, mod...2325 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
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AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it suppo...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
2100 days ago
Comment on "Short-read assembly using Spades !"
...e the general steps for short-read assembly using SPAdes: Quality control of raw reads: Before running...ools such as Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAd...378 days ago
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