Results for "control"

Tags

  • Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

    Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...

    Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data

    2327 days ago

  • AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

    Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it suppo...

    Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data

    2099 days ago

  • KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

    KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in output for easy plotting. gcp: K-mer GC Pr...

    Tags: KAT, K-mer, analysis, toolkit, quality, control, NGS, datasets, genome, assemblies

    1944 days ago

  • Indexcov: fast coverage quality control for whole-genome sequencing

    indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize potential batch effects, and infer the sex of a sample. Indexcov is available at https://github.com/...

    Tags: Indexcov, fast, coverage, quality, control, whole-genome, sequencing

    2038 days ago

  • cisMuton: caller that detects SNVs/indels by comparing target (foreground) and control (background) samples

    cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Q...

    Tags: caller, detects, SNVs, indels, comparing, target, foreground, control, background, samples

    1507 days ago

  • iSeqQC: a tool for expression-based quality control in RNA sequencing

    iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical approaches including unsupervised clustering, agglomerative hierarchical clustering and correlat...

    Tags: iSeqQC, tool, expression-based, quality, control, RNA, sequencing

    1502 days ago