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Results for "conversion"

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• • Surabhi Chaudhary@surabhi

  

  #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

  Tags: BAM, conversion, Samtool

  2949 days ago

• • Surabhi Chaudhary@surabhi

  

  #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

  Tags: BAM, fastaq, conversion, Samtool

  2949 days ago

• • Jit@jit.aber

  

  sam to bam conversion !!

  To do sam to bam conversion, follow the following commands :-  Code: $ samtools view -b -S file.sam > file.bam Then you will need to use  Code: $ samtools sort file.bam file-sorted followed by Code: $ samtools index file-sorted.bam in order to get an indexed fil...

  Tags: sam, bam, conversion

  2275 days ago

• • Jit@jit.aber

  

  CrossMap: a program for convenient conversion of genome coordinates

  CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWi...

  Tags: CrossMap, program, convenient, conversion, genome, coordinates

  2150 days ago

• • Rahul Nayak@rahul

  

  CrossMap: program for genome coordinates conversion between different assemblies

  CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF,&nb...

  Tags: CrossMap, program, genome, coordinates, conversion, different, assemblies

  815 days ago

• • Abhimanyu Singh@abhimanyu

  

  maf2synteny

  A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]

  Tags: Tool, Conversion, Recover, Synteny, Blocks, Multiple, Alignment, MAF, Format, maf2synteny

  2528 days ago

• • Jit@jit.aber

  

  Assembly Conversion https://ics.hutton.ac.uk/tablet/assembly-conversion/ #Assembly #Conversion #NGS

  Tags: Assembly, Conversion, NGS

  2090 days ago