Results for "convert"

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  • fastq to fasta convertor $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #Convert #Fasta #Fastq #fa #fq

    Tags: Convert, Fasta, Fastq, fa, fq

    2514 days ago

  • MiraConvert http://manpages.ubuntu.com/manpages/xenial/man1/miraconvert.1.html #MIRA #Assembler #Convert

    Tags: MIRA, Assembler, Convert

    2668 days ago

  • Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

    Tags: SAM, BAM, Convert, Tab

    2584 days ago

  • Convert MAF file format http://last.cbrc.jp/doc/maf-convert.html #MAF #Convert #Format

    Tags: MAF, Convert, Format

    2515 days ago

  • MAF2Synteny https://github.com/fenderglass/maf2synteny #Convert #Synteny #MAF #Ragout

    Tags: Convert, Synteny, MAF, Ragout

    2515 days ago

  • Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

    Tags: Genome, Masked, N, Convert

    2486 days ago

  • Converting BLAST output into CSV

    Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there w...

    Tags: Convert, BLAST, output, CSV, blastn, megablast

    2300 days ago

  • #Convert #fasta file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta

    Tags: Convert, fasta

    2198 days ago

  • Convert lowercase letter to N:$ sed -e '/^>/! s/[[:lower:]]/N/g' in.fasta > out.fasta #Convert #Lowercase #Fasta #N

    Tags: Convert, Lowercase, Fasta, N

    2181 days ago

  • Convert VCF to tab-deilimited table

    Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to multiple_sample_GT.table using this...

    Tags: Convert, VCF, tab-deilimited, table

    2145 days ago