Results for "convert"


  • fastq to fasta convertor $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #Convert #Fasta #Fastq #fa #fq

    Tags: Convert, Fasta, Fastq, fa, fq

    258 days ago

  • MiraConvert #MIRA #Assembler #Convert

    Tags: MIRA, Assembler, Convert

    412 days ago

  • Convert a SAM file to tab-delimited alignment coordinates #SAM #BAM #Convert #Tab

    Tags: SAM, BAM, Convert, Tab

    328 days ago

  • Convert MAF file format #MAF #Convert #Format

    Tags: MAF, Convert, Format

    259 days ago

  • MAF2Synteny #Convert #Synteny #MAF #Ragout

    Tags: Convert, Synteny, MAF, Ragout

    259 days ago

  • Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

    Tags: Genome, Masked, N, Convert

    230 days ago

  • Converting BLAST output into CSV

    Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there w...

    Tags: Convert, BLAST, output, CSV, blastn, megablast

    44 days ago

  • Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #fastq #fasta #convert

    Tags: fastq, fasta, convert

    62 days ago

  • Converting FASTQ to FASTA

    There are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence need...

    Tags: fasta, fastq, convert, sed, awk, seqtk, bioawk, fastx, Emboss, fastq2fasta

    12 days ago